snakemake.sim_analysis

Module Contents

snakemake.sim_analysis.sim_analyse_gen_stats_table(inputfile, outputfile, variable)

Plot model simulation time courses (Python wrapper).

Parameters:

• inputfile – the file containing the repeats
• outputfile – the output file containing the statistics
• variable – the model variable to analyse

snakemake.sim_analysis.sim_analyse_summarise_data(inputdir, model, outputfile_repeats, variable)

Plot model simulation time courses (Python wrapper).

Parameters:

• inputdir – the directory containing the data to analyse
• model – the model name
• outputfile_repeats – the output file containing the model simulation repeats
• variable – the model variable to analyse

snakemake.sim_analysis.sim_analyse_plot_sep_sims(inputdir, outputdir, model, exp_dataset, plot_exp_dataset, exp_dataset_alpha, xaxis_label, yaxis_label, variable)

Plot model simulation time courses (Python wrapper).

Parameters:

• inputdir – the directory containing the data to analyse
• outputdir – the output directory containing the results
• model – the model name
• exp_dataset – the full path of the experimental data set
• plot_exp_dataset – True if the experimental data set should also be plotted
• exp_dataset_alpha – the alpha level for the data set
• xaxis_label – the label for the x axis (e.g. Time [min])
• yaxis_label – the label for the y axis (e.g. Level [a.u.])
• variable – the model variable to analyse

snakemake.sim_analysis.sim_analyse_plot_comb_sims(inputdir, outputdir, model, exp_dataset, plot_exp_dataset, exp_dataset_alpha, xaxis_label, yaxis_label, variable)

Plot model simulation time courses (Python wrapper).

Parameters:

• inputdir – the directory containing the data to analyse
• outputdir – the output directory containing the results
• model – the model name
• exp_dataset – the full path of the experimental data set
• plot_exp_dataset – True if the experimental data set should also be plotted
• exp_dataset_alpha – the alpha level for the data set
• xaxis_label – the label for the x axis (e.g. Time [min])
• yaxis_label – the label for the y axis (e.g. Level [a.u.])
• variable – the model variable to analyse