snakemake.ps1_postproc

Module Contents

snakemake.ps1_postproc.ps1_header_init(report, scanned_par)

Header report initialisation for single parameter scan pipeline.

Parameters:

• report – a report
• scanned_par – the scanned parameter

:return a list containing the header or an empty list if no header was created.

snakemake.ps1_postproc.generic_postproc(infile, outfile, scanned_par, simulate_intervals, single_param_scan_intervals, copasi=True)

Perform post processing organisation to single parameter scan report files.

Parameters:

• infile – the model to process
• outfile – the directory to store the results
• scanned_par – the scanned parameter
• simulate_intervals – the time step of each simulation
• single_param_scan_intervals – the number of scans to perform
• copasi – True if the model is a Copasi model

snakemake.ps1_postproc.ps1_postproc(infile, outfile, scanned_par, simulate_intervals, single_param_scan_intervals, copasi=True)

Perform post processing organisation to single parameter scan report files.

Parameters:

• infile – the model to process
• outfile – the directory to store the results
• scanned_par – the scanned parameter
• simulate_intervals – the time step of each simulation
• single_param_scan_intervals – the number of scans to perform
• copasi – True if the model is a Copasi model