snakemake.ps1_analysis

Module Contents

snakemake.ps1_analysis.ps1_analyse_plot(model_name, inhibition_only, inputdir, outputdir, repeat, percent_levels, min_level, max_level, levels_number, xaxis_label, yaxis_label)

Plot model single parameter scan time courses (Python wrapper).

Parameters:

• model_name – the model name without extension
• inhibition_only – true if the scanning only decreases the variable amount (inhibition only)
• inputdir – the input directory containing the simulated data
• outputdir – the output directory that will contain the simulated plots
• repeat – the simulation number
• percent_levels – true if scanning levels are in percent
• min_level – the minimum level
• max_level – the maximum level
• levels_number – the number of levels
• homogeneous_lines – true if lines should be plotted homogeneously
• xaxis_label – the label for the x axis (e.g. Time [min])
• yaxis_label – the label for the y axis (e.g. Level [a.u.])

snakemake.ps1_analysis.ps1_analyse_plot_homogen(model_name, inputdir, outputdir, repeat, xaxis_label, yaxis_label)

Plot model single parameter scan time courses using homogeneous lines (Python wrapper).

Parameters:

• model_name – the model name without extension
• inputdir – the input directory containing the simulated data
• outputdir – the output directory that will contain the simulated plots
• repeat – the simulation number
• xaxis_label – the label for the x axis (e.g. Time [min])
• yaxis_label – the label for the y axis (e.g. Level [a.u.])