simul.copasi.model_checking

Module Contents

simul.copasi.model_checking.copasi_model_checking(model_filename, fileout, task_name="")[source]

Perform a basic model checking for a COPASI model file.

Parameters:
  • model_filename – the filename to a COPASI file
  • fileout – the file containing the model checking results
  • task_name – the task to check
Returns:

a boolean indicating whether the model could be loaded successfully
simul.copasi.model_checking.severity2string(severity)[source]

Return a string representing the severity of the error message :param severity: an integer representing severity :return: a string of the error message

simul.copasi.model_checking.check_model_loading(model_filename, data_model)[source]

Check whether the COPASI model can be loaded

Parameters:
  • model_filename – the filename to a COPASI file
  • data_model – the COPASI data model structure
Returns:

a boolean indicating whether the model could be loaded successfully
simul.copasi.model_checking.check_task_selection(model_filename, task_name, data_model)[source]

Check whether the COPASI model task can be executed

Parameters:
  • model_filename – the filename to a COPASI file
  • task_name – the task to check
  • data_model – the COPASI data model structure.
Returns:

a boolean indicating whether the model task can be executed correctly
simul.copasi.model_checking.check_task_report(model_filename, task_name, data_model, task)[source]

Check whether the COPASI model task can be executed

Parameters:
  • model_filename – the filename to a COPASI file
  • task_name – the task to check
  • data_model – the COPASI data model structure
  • task – the COPASI task data structure
Returns:

a boolean indicating whether the model task can be executed correctly