report.latex_reports

Module Contents

report.latex_reports.get_latex_header(pdftitle="SBpipe report", title="SBpipe report", abstract="Generic report.")[source]

Initialize a Latex header with a title and an abstract.

Parameters:
  • pdftitle – the pdftitle for the LaTeX header
  • title – the title for the LaTeX header
  • abstract – the abstract for the LaTeX header
Returns:

the LaTeX header

report.latex_reports.latex_report_ps1(outputdir, plots_folder, filename_prefix, model_noext, scanned_par)[source]

Generate a report for a single parameter scan task.

Parameters:
  • outputdir – the output directory
  • plots_folder – the folder containing the simulated plots
  • filename_prefix – the prefix for the LaTeX file
  • model_noext – the model name
  • scanned_par – the scanned parameter
report.latex_reports.latex_report_ps2(outputdir, plots_folder, filename_prefix, model_noext, scanned_par1, scanned_par2)[source]

Generate a report for a double parameter scan task.

Parameters:
  • outputdir – the output directory
  • plots_folder – the folder containing the simulated plots
  • filename_prefix – the prefix for the LaTeX file
  • model_noext – the model name
  • scanned_par1 – the 1st scanned parameter
  • scanned_par2 – the 2nd scanned parameter
report.latex_reports.latex_report_sim(outputdir, plots_folder, model_noext, filename_prefix)[source]

Generate a report for a time course task.

Parameters:
  • outputdir – the output directory
  • plots_folder – the folder containing the simulated plots
  • model_noext – the model name
  • filename_prefix – the prefix for the LaTeX file
report.latex_reports.latex_report_pe(outputdir, plots_folder, model_noext, filename_prefix)[source]

Generate a report for a parameter estimation task.

Parameters:
  • outputdir – the output directory
  • plots_folder – the folder containing the simulated plots
  • model_noext – the model name
  • filename_prefix – the prefix for the LaTeX file
report.latex_reports.latex_report(outputdir, plots_folder, model_noext, filename_prefix, caption=False)[source]

Generate a generic report.

Parameters:
  • outputdir – the output directory
  • plots_folder – the folder containing the simulated plots
  • model_noext – the model name
  • filename_prefix – the prefix for the LaTeX file
  • caption – True if figure captions (=figure file name) should be added
report.latex_reports.pdf_report(outputdir, filename)[source]

Generate a PDF report from LaTeX report using pdflatex.

Parameters:
  • outputdir – the output directory
  • filename – the LaTeX file name