All modules for which code is available

• __init__
• logging
• pl.create.newproj
• pl.pe.parest
• pl.pipeline
• pl.ps1.parscan1
• pl.ps2.parscan2
• pl.sim.sim
• report.latex_reports
• sbpipe_cleanup
• sbpipe_move_datasets
• simul.copasi.copasi
• simul.copasi.model_checking
• simul.simul
• snakemake.data_generation
• snakemake.model_checking
• snakemake.pe_collection
• snakemake.pe_postproc
• snakemake.preproc
• snakemake.ps1_postproc
• snakemake.ps2_postproc
• snakemake.sim_postproc
• utils.dependencies
• utils.io
• utils.parcomp
• utils.rand
• utils.re_utils